Deputy Chief of Mission Jobs in South Sudan

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Job Description

Deputy Chief of Mission

Company: International Organization for Migration (IOM)

Location: Juba, South Sudan

Job Type: Full-Time

Department: Mission Management & Operations

Experience: 10–15 Years

Salary: USD 6,500 – 10,500 per month (depending on qualifications and international experience)

Reporting To: Chief of Mission


Position Overview

The International Organization for Migration (IOM) is seeking an experienced Deputy Chief of Mission to support strategic leadership, operational management, donor engagement, humanitarian coordination, and program oversight across South Sudan. The successful candidate will assist in managing a complex country portfolio covering emergency response, migration management, community stabilization, livelihoods, protection, and development programs.

This role is ideal for professionals seeking Deputy Chief of Mission jobs in South Sudan, International NGO jobs in Juba, and senior humanitarian leadership opportunities across East Africa.

Professionals interested in jobs in South Sudan and humanitarian vacancies may explore: Jobs in South Sudan


Key Responsibilities

  • Support the Chief of Mission in overall strategic leadership and country program management.
  • Coordinate implementation of humanitarian and development projects across multiple states.
  • Represent the organization during government, donor, UN, and diplomatic meetings.
  • Lead operational planning, risk management, and program quality assurance.
  • Oversee budget utilization and financial accountability across all departments.
  • Strengthen partnerships with ministries, donors, NGOs, and international agencies.
  • Supervise program managers, technical advisors, and support units.
  • Ensure compliance with donor regulations and organizational policies.
  • Monitor security developments affecting field operations.
  • Support resource mobilization and proposal development initiatives.
  • Coordinate emergency response activities during humanitarian crises.
  • Review monitoring reports and ensure achievement of strategic objectives.
  • Promote staff capacity development and leadership succession planning.
  • Oversee procurement, logistics, administration, and operational support functions.
  • Lead organizational representation in humanitarian coordination forums.

Educational Requirements

  • Master’s Degree in International Relations, Public Administration, Development Studies, Political Science, Economics, Humanitarian Affairs, or related discipline.
  • Additional executive leadership qualifications will be advantageous.
  • Project Management Professional (PMP) certification preferred.

Experience Requirements

  • Minimum 10 years of progressively responsible international experience.
  • At least 5 years in senior management positions.
  • Previous experience managing large donor-funded programs.
  • Experience working in fragile or conflict-affected environments.
  • Proven track record in stakeholder engagement and strategic leadership.
  • Strong understanding of humanitarian architecture and development programming.

Technical Competencies

  • Strategic Planning
  • Humanitarian Coordination
  • Program Management
  • Donor Relations
  • Budget Oversight
  • Team Leadership
  • Risk Management
  • Policy Development
  • Resource Mobilization
  • Stakeholder Engagement
  • Monitoring & Evaluation
  • Conflict Sensitivity
  • Emergency Response
  • Organizational Development
  • Governance and Compliance

Training & Professional Development

The selected candidate will receive:

  • Executive leadership development programs.
  • International humanitarian coordination training.
  • Advanced project management certification support.
  • Security management workshops.
  • Donor compliance and grants management training.
  • Regional leadership exchange opportunities.

Professionals interested in regional opportunities may also review: Jobs in Nigeria


Performance Indicators

  • Program delivery effectiveness.
  • Donor satisfaction and compliance ratings.
  • Budget utilization efficiency.
  • Staff retention and development outcomes.
  • Humanitarian response timeliness.
  • Strategic partnership growth.
  • Resource mobilization achievements.

Compensation & Benefits

  • Competitive international remuneration package.
  • Housing allowance.
  • Medical insurance coverage.
  • Education allowance for eligible dependents.
  • Annual leave and home leave benefits.
  • Relocation assistance.
  • Pension contribution program.
  • Professional development sponsorship.

Career Growth Opportunities

This position offers progression toward Chief of Mission, Regional Director, Country Director, Humanitarian Coordinator, Program Director, or Global Operations Leadership roles.

Candidates seeking jobs in Juba, NGO jobs in South Sudan, UN jobs in South Sudan, Humanitarian jobs in South Sudan, International Development jobs in South Sudan, Program Director jobs in South Sudan, Country Manager jobs in South Sudan, Deputy Chief of Mission jobs in Africa, Senior NGO jobs in Juba, and Leadership jobs in South Sudan are encouraged to apply.

For additional professional opportunities across Southern Africa, candidates may visit: Jobs in Zambia

Individuals interested in East African leadership positions can also explore: Jobs in Kenya


Application Requirements

Interested applicants should submit:

  • Detailed Curriculum Vitae (CV)
  • Cover Letter
  • Academic Certificates
  • Professional Certifications
  • Three Professional References
  • Valid Passport or National Identification
  • Employment Testimonials (where applicable)

Equal Opportunity Statement

The International Organization for Migration (IOM) is committed to diversity, inclusion, and equal employment opportunities. Qualified candidates from all backgrounds are encouraged to apply. Only shortlisted applicants will be contacted for further assessment and interviews.